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| DEPARTMENT OF MICROBIOLOGY |
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| The overall aim of the Department of Microbiology is to develop tools and intervention strategies for the control of infections with HIV, TBC, and associated infections, mainly in developing countries. The Department of Microbiology consists of four units: Mycobacteriology Virology Immunology HIV/STD research and intervention |
Mycobacteriology | |
| Unit of Mycobacteriology Objective The Mycobacteriology Unit aims to optimize the diagnosis and control of tuberculosis and non-tuberculous mycobacteria (NTM). We therefore focus on the rapid detection and worldwide surveillance of multidrug resistant tuberculosis (MDR TB), and the control of Buruli Ulcer (BU) in developing countries. Research activities The specific objectives and recent results of the current projects can be summarized as follows: 1. Evaluation of Category II |
Objective | |
The problem of drug-resistant tuberculosis. Overcrowding contributes to TB transmission in Russian prisons. |
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2. MDR-TB in Kinshasa (DR Congo) Over seven hundred M. tuberculosis complex isolates from Kinshasa, Congo have been included in a study on the prevalence of resistance to first- and second-line drugs. Preliminary analyses showed that 39% of the isolates were resistant to one or more drugs. About 6% were found to be resistant to rifampicin (RMP), most of them being MDR. A high rate (23%) of resistance to isoniazid (INH) was found. Mono-resistance to streptomycin (SM) was 8.8% and mono-resistance to ethambutol (EMB) was surprisingly high (5%), suggesting uncontrolled use of EMB. No resistance was found to the second line drugs ofloxacin and kanamycin. 3. Drug susceptibility (DST) as a factor for evaluation of national treatment regimens 4. Detection of resistance to second-line drugs / Evaluation of different solid media and drug concentrations 5. Rapid detection of drug resistance 6. Molecular analysis of drug resistance 7. Low-oxygen conditions: their effect on the pathogenesis and treatment of tuberculosis and other mycobacterial infections 8. Diagnosis of Buruli Ulcer and detection of Mycobacterium ulcerans 9. Clinical manifestation of M. ulcerans infection 10. Development of effective chemotherapeutic regimens against M. ulcerans 11. Quest for the source of infection of M. ulcerans 12. Characterisation of the virulence factors of M. ulcerans 13. Development of diagnostic tools for the control of paratuberculosis |
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Assistance and education activities In May 1999 our laboratory was selected as the new worldwide coordinator of the WHO/IUATLD Supranational Reference Laboratory (SRL) Network for Tuberculosis Drug Resistance Surveillance (DRS). |
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| Training in bacteriological and molecular biological techniques were provided for several national and international students. Courses in bacteriology and molecular biology, as well as practical training on these items, were included in the International Course of Tropical Biomedical Science. In October 1999 H. Traore obtained the degree of Doctor in the Pharma-ceutical Sciences at the ULB with a thesis entitled Analyse génétique des mé-canismes de résistance à la rifampicine et de la transmission des souches du complexe M. tuberculosis. Scientific awards Prof. F. Portaels behaalde de SmithKline-Beecham prijs voor Overzeese Wetenschappen voor haar werk op BU (zie Focus on). Cooperation Within the framework of the worldwide surveillance of MDR TB, the Unit collaborated closely with the International Red Cross and with Médecins sans Frontières (Belgium, France and Luxemburg) in some countries of the former Soviet Union. |
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Virology Unit Objectives Our main research subject is the phenotypic and genotypic diversity of HIV, and its impact on vaccine development, antiviral therapy and diagnosis of HIV. |
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The virology lab, a real beehive |
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Research activities 1. Diagnosis 2. Genetic diversity of HIV-1 3. HIV vaccine development Assistance and Teaching Activities 1. AIDS Reference Laboratory
2. Evaluation of HIV diagnostic assays 3. Other activities
4. Logistical activities
Collaboration The Virology Unit collaborates intensively with the other units in the Department.
The unit collaborates, within Belgium, with the seven other AIDS Reference Laboratories; with the Universities of Liège, Antwerp and Ghent and with the Red Cross Blood Transfusion Centre (Antwerp). Basic scientific work is also performed with and for the companies Innogenetics, Tibotec, Virco and the Janssen Research Foundation. The prime international collaborations are with partners in The Netherlands (Biomedical Primate Research Centre, Rijswijck, Organon Teknika); Ivory Coast (Projet Retro-Ci, Institut Pasteur); Cameroon (CUSS); Ghana (Noguchi Institute); China (Institute of Biological Products of Shanghai); Benin (PNLS); Argentina (Bios Rosario S.A.); USA (Henry M. Jackson Foundation, Los Alamos National Laboratory); France (ORSTOM, INSERM); U.K. (St. Marys Hospital Medical School, London); Germany (Max von Pettenkofer Institute, München); Japan (N.I.H., Tokyo); Canada (Hôpital du St. Sacrément, Quebec). The unit is also partner in the European AIDS Virus Surveillance Programme (EASP) and works closely with UNAIDS programmes. |
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Immunology Unit Research activities The research of the Immunology unit is focused on the cellular immunology of HIV in humans and SIVcpz in chimpanzees, and on the immune interaction between HIV and Mycobacterium tuberculosi (MTB). |
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HIV-1, transfected with enhanced green fluorescent protein (EGFP) as a tool to study viral transfer between dendritic cells (DC) and CD4 T-cells |
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1. Interaction of HIV with dendritic cells (DC) and T cells Aim: To investigate which genotypic or biophenotypic HIV characteristics are responsible for DC tropism and which are the determining factors in HIV transfer between DC and T cells. HIV transfer was monitored using flow cytometry. Although DC themselves were selectively susceptible to infection with non-syncytium-inducing, CCR5-using (NSI/R5) HIV variants, they can also transmit SI/X4 strains to CD4+ T cells. This transfer requires cell-cell contact, but no external T cell activation. It occurred most efficiently in an autologous setting. NSI/R5 strains can also be transferred inversely (from T cells to DC) without external activation. The efficiency of this bi-directional HIV transfer could explain why the virus disseminates so quickly, without the need for T cell stimulation in vivo. Currently we are investigating the effect of DC differentiation on HIV susceptibility, on selection of HIV phenotypes and on the viral transfer to T cells. In addition, we use the DC model to explore the capacity of various anti-HIV drugs as post-exposure prophylaxis after sexual transmission. 2. Co-pathogenesis of HIV and pulmonary tuberculosis (PTB) 3. Natural resistance against infection with HIV in Abidjan 4. HIV and SIVcpz infection in chimpansees Assistance and educational activities The total number of routine CD4 assays performed for the ITM outpatient clinic in 1999 was 2569. These assays are being performed in the context of the immunological follow-up of HIV seropositive patients. |
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Wim Jennes and colleagues in the virology laboratory of the projet RETRO-CI during the study on HIV-exposed uninfected commercial sex workers in Abidjan, Côte dIvoire. |
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Collaboration The past year we have collaborated intensively with the Virology Unit and the STD/HIV Unit of our department, with the AIDS unit from the department of clinical sciences and the schistosomiasis unit (J. Scott, B. Gryseels).
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HIV/STD Research The overall aim of the unit is to identify and develop effective strategies for the prevention and control of STDs and HIV/AIDS in developing countries. |
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From left to right : |
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Research activities 1. Multicentre study on factors determining the differential spread of HIV in African towns |
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The multicentre study on factors determining the differential spread of HIV in four African cities was a collaborative effort of 15 research teams |
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2. Studies on acceptability and efficacy of vaginal microbicides Throughout 1998 the unit continued the co-ordination of a multicentre study to assess the effect of a nonoxynol-9 containing vaginal gel on HIV infection. Other endpoints include sexually transmitted diseases, safety and acceptability. The study is ongoing among female sex workers in Thailand, South Africa, Benin and Ivory Coast. The unit is responsible for the technical co-ordination which includes laboratory quality control, and also provides administrative and logistic support. The unit also remains involved in other areas of vaginal microbicide re-search. The European Union granted a project subsidy to perform safety and efficacy trials with new products in Belgium, UK, Côte d'Ivoire and Uganda. L. Van Damme attended a workshop on the role of colposcopy in microbicide research. 3. Assessing biologic risk factors for the transmission of HIV 4. Research on the delivery of comprehensive sexual health services for female sex workers and other preventive measures 5. Integration of different components of Reproductive Health Programmes 6. Care and prevention of STD in the Kingdom of Cambodia 7. Technical assistance to IMPACT projects in developing countries 8. Activities of the STD diagnostics laboratory 9. STD/HIV prevention and AIDS care for migrants from sub-Saharan Africa and asylum seekers living in Flanders
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Conference 23.11.99 and workshop on basic knowledge, education and setting up networks with African migrants and health care professionals |
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Technical assistance / Service delivery At present, staff members of the unit are regular consultants for the Belgian Cooperation, Family Health International (IMPACT), UNAIDS, The World Bank, International Family Health. Scientific collaborations Within the Institute Outside the Institute |
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